django-mogi models

class mogi.models.models_annotations.CombinedAnnotation(id, dataset_id, inchikey, inchikey1, compound_name, ms_type, sid, grpid, grp_name, mz, sm_lpid, pubchem_cids, rt, well, sirius_score, sirius_wscore, metfrag_score, metfrag_wscore, sm_score, sm_wscore, ms1_lookup_score, ms1_lookup_wscore, biosim_max_score, biosim_wscore, wscore, rank, adduct_overall)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_annotations.MetFrag(id, dataset_id, inchikey, inchikey1, inchikey2, inchikey3, sample_name, mz, grpid, rt, adduct, compound_name, expl_peaks, formulas_of_expl_peaks, fragmenter_score, fragmenter_score_values, identifier, inchi, maximum_tree_depth, molecular_formula, monoisotopic_mass, no_expl_peaks, number_peaks_used, file, offline_met_fusion_score, smiles, score, suspect_list_score, xlogp3, pid)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_annotations.SiriusCSIFingerID(id, dataset_id, mz, rt, grpid, file, adduct, rank, formula_rank, score, molecular_formula, inchikey2, inchi, name, smiles, xlogp, pubchemids, links, dbflags, bounded_score, pid)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_annotations.SpectralMatching(id, dataset_id, inchikey, mid, lpid, qpid, dpc, rdpc, cdpc, mcount, allcount, mpercent, library_rt, query_rt, rtdiff, library_precursor_mz, query_precursor_mz, library_accession, library_precursor_type, library_entry_name, library_source_name, library_compound_name)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_compounds.Compound(id, data_file, original_filename, user, genericfile_ptr, created_at, updated_at, inchikey, inchikey1, inchi, smiles, molecular_formula, monoisotopic_exact_mass, compound_name, natural_product_inchikey1, pubchem_cids, hmdb_ids, kegg_ids, chebi_ids, kingdom, superclass, _class, subclass, direct_parent, molecular_framework, predicted_lipidmaps_terms, assay, extraction, spe, spe_frac, chromatography, measurement, polarity, organisms, lcmsdimsbool, nmrbool, gcmsbool, smbool, metfragbool, siriusbool, mzcloudsmbool, galaxysmbool, gnpssmbool, msi_level)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_compounds.HMDB(id, inchikey, hmdbid)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_compounds.KEGG(id, inchikey, cid)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_compounds.PubChem(id, inchikey, cid)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_compounds.UploadCompounds(id, data_file, original_filename, user, genericfile_ptr)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_datasets.Dataset(id, assay, galaxy_history_url, metabolite_standard, fractionation, sqlite, tsv, polarity)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_datasets.UploadDatasets(id, data_file, original_filename, user, genericfile_ptr)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_galaxy.ISAGalaxyTrack(id, galaxyinstancetracking, isatogalaxyparam, investigation, galaxy_id)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_galaxy.IncomingGalaxyData(id, galaxy_url, galaxy_name, galaxy_data_id, galaxy_history_id, galaxy_history_name, other_details, investigation_name)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.Assay(id, study, description, name, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.AssayDetail(id, assay, code_field, studysample, samplecollectionprocess, extractionprocess, speprocess, chromatographyprocess, measurementprocess, datatransformationprocess, metaboliteidentifcationprocess)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.ChromatographyProcess(id, chromatographyprotocol, date, details, chromatographyfrac)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.ChromatographyProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at, chromatographytype, instrument_name)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.ChromatographyType(id, type, description, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.DataTransformationProcess(id, datatransformationprotocol, details)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.DataTransformationProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.ExportISA(id, investigation, mzml_parse, metabolights_compat, json, isatab)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.ExtractionProcess(id, extractionprotocol, date, details)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.ExtractionProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at, extractiontype, postextraction, derivitisation)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.ExtractionType(id, type, description, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.Investigation(id, name, description, slug, json_file, isa_tab_zip, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.MFile(id, data_file, original_filename, user, genericfile_ptr, run, mfilesuffix, prefix)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.MFileSuffix(id, suffix)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.MISAFile(id, data_file, original_filename, user, genericfile_ptr, investigation)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.MeasurementProcess(id, measurementprotocol, date, details, polaritytype)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.MeasurementProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at, measurementtechnique)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.MeasurementTechnique(id, type, description, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.MetaboliteIdentificationProcess(id, metaboliteidentificationprotocol, details)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.MetaboliteIdentificationProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.OntologyTerm(id, name, description, ontology_id, iri, obo_id, ontology_name, ontology_prefix, short_form, type, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.Organism(id, ontologyterm, name, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.OrganismPart(id, ontologyterm, name, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.PolarityType(id, type, description, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.Run(id, technical_replicate, prefix, polaritytype, assaydetail, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.SampleCollectionProcess(id, samplecollectionprotocol, details)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.SampleCollectionProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.SampleType(id, type, ontologyterm, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.SpeProcess(id, speprotocol, date, details, spefrac)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.SpeProtocol(id, name, description, uri, version, code_field, public, owner, protocol_file, created_at, updated_at, spetype)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.SpeType(id, type, description, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.Study(id, investigation, description, name, title, grant_number, funding_agency, submission_date, public_release_date, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_isa.StudyFactor(id, ontologyterm_type, ontologyterm_value, value, ontologyterm_unit, full_name, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

save(*args, **kwargs)

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class mogi.models.models_isa.StudySample(id, study, sample_name, source_name, organism, organism_part, sampletype, samplecollectionprocess, public, owner)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.FragSpectraType(id, type, short_name)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.MinMaxFloat(min_value=None, max_value=None, *args, **kwargs)

formfield(**kwargs)

Return a django.forms.Field instance for this field.

class mogi.models.models_search.MsLevel(id, ms_level)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchFragParam(id, user, description, searchparam_ptr, mz_precursor, products, ppm_precursor_tolerance, ppm_product_tolerance, dot_product_score_threshold, ra_threshold, ra_diff_threshold, metabolite_reference_standard)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchFragResult(id, searchparam, dpc, l_prec_mz, q_prec_mz, rt, well, ppm_diff_prec, dataset_pid, dataset_grpid, dataset_sid, spectrum_type, spectrum_details, top_spectral_match, top_metfrag, top_sirius_csifingerid, top_combined_annotation, top_wscore, dataset)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchFragSpectra(id, searchparam, mz, ra, query_library)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchMonoParam(id, user, description, searchparam_ptr, masses, ppm_tolerance, matches)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchMonoResult(id, searchparam, compound, massquery, ppmdiff)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchMzParam(id, user, description, searchparam_ptr, masses, ppm_target_tolerance, ppm_library_tolerance)

exception DoesNotExist

exception MultipleObjectsReturned

class mogi.models.models_search.SearchParam(id, user, description)

exception DoesNotExist

exception MultipleObjectsReturned