.. _django-galaxy:

django-galaxy
========================================

Django interfacing with Galaxy. Backend using the bioblend API.

`Galaxy <https://galaxyproject.org/>`_ is a web based workflow platform that can be used to perform bioinformatics in a reproducible and sharable environment.

For current code and updates, use `computational-metabolomics/django-galaxy <https://github.com/computational-metabolomics/django-galaxy>`_.

API Reference
-------------

.. toctree::
    :maxdepth: 2

    API Modules <api/index.rst>



Setup
-----

1. Add "galaxy" and django application dependencies to your INSTALLED_APPS setting like this (galaxy should come before gfiles)::

    INSTALLED_APPS = [
        ...
        'galaxy',
        'gfiles',

        'django_tables2',
        'bootstrap3',
        'django_tables2_column_shifter',
        'django_sb_admin',
        'django_filter'
    ]

2. Include the polls URLconf in your project urls.py like this::

    url(r'^', include('gfiles.urls')),
    path('galaxy/', include('galaxy.urls')),

3. Run `python manage.py migrate` to create the models.

4. Start the development server and visit http://127.0.0.1:8000